IL_9NL6_103

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_103 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0881

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9NL6|1|R1|C|2652
9NL6|1|R1|U|2653
9NL6|1|R1|A|2654
9NL6|1|R1|G|2655
9NL6|1|R1|U|2656
9NL6|1|R1|A|2657
9NL6|1|R1|C|2658
*
9NL6|1|R1|G|2663
9NL6|1|R1|G|2664
9NL6|1|R1|A|2665
9NL6|1|R1|C|2666
9NL6|1|R1|C|2667
9NL6|1|R1|G|2668

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 6

Large ribosomal subunit protein uL6