IL_9NL6_128

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9NL6|1|R3|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_128 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1363

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9NL6|1|R3|G|147
9NL6|1|R3|G|148
9NL6|1|R3|A|149
9NL6|1|R3|U|150
9NL6|1|R3|A|151
9NL6|1|R3|A|152
9NL6|1|R3|C|153
*
9NL6|1|R3|G|168
9NL6|1|R3|C|169
9NL6|1|R3|U|170
9NL6|1|R3|A|171
9NL6|1|R3|A|172
9NL6|1|R3|U|173
9NL6|1|R3|A|174
9NL6|1|R3|C|175

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20