IL_9NL6_175

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

9NL6|1|R3|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_175 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3648

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9NL6|1|R3|C|1407
9NL6|1|R3|A|1408
9NL6|1|R3|C|1409
*
9NL6|1|R3|G|1491
9NL6|1|R3|A|1492
9NL6|1|R3|A|1493
9NL6|1|R3|G|1494

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sl

Small ribosomal subunit protein uS12