3D structure

PDB id
9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NL7_026 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.0985
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

9NL7|1|R1|G|856
9NL7|1|R1|G|857
9NL7|1|R1|G|858
9NL7|1|R1|G|859
9NL7|1|R1|U|860
9NL7|1|R1|A|861
9NL7|1|R1|G|862
*
9NL7|1|R1|C|915
9NL7|1|R1|G|916
9NL7|1|R1|A|917
9NL7|1|R1|A|918
9NL7|1|R1|U|919
9NL7|1|R1|A|920
9NL7|1|R1|C|921

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 16
50S ribosomal protein L16
Chain 27
50S ribosomal protein L27
Chain 30
50S ribosomal protein L30
Chain R2
5S ribosomal RNA; 5S rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.16 s