3D structure

PDB id
9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
9NL7|1|R1|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NL7_038 not in the Motif Atlas
Homologous match to IL_4WF9_041
Geometric discrepancy: 0.1152
The information below is about IL_4WF9_041
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

9NL7|1|R1|G|1031
9NL7|1|R1|A|1032
9NL7|1|R1|U|1033
9NL7|1|R1|G|1034
*
9NL7|1|R1|C|1121
9NL7|1|R1|G|1122
9NL7|1|R1|C|1123

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 16
50S ribosomal protein L16
Chain 36
50S ribosomal protein L36
Chain R2
5S ribosomal RNA; 5S rRNA

Coloring options:


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