IL_9NL7_056

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL7_056 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1786

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9NL7|1|R1|U|1474
9NL7|1|R1|G|1475
9NL7|1|R1|U|1476
9NL7|1|R1|A|1477
9NL7|1|R1|G|1478
*
9NL7|1|R1|U|1513
9NL7|1|R1|G|1514
9NL7|1|R1|A|1515
9NL7|1|R1|G|1516
9NL7|1|R1|G|1517

Current chains

Chain R1

23S ribosomal RNA

Nearby chains