IL_9NL7_073

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL7_073 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1068

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NL7|1|R1|U|1851
9NL7|1|R1|U|1852
9NL7|1|R1|A|1853
9NL7|1|R1|A|1854
9NL7|1|R1|U|1855
9NL7|1|R1|U|1856
9NL7|1|R1|G|1857
9NL7|1|R1|A|1858
9NL7|1|R1|U|1859
9NL7|1|R1|G|1860
*
9NL7|1|R1|U|1882
9NL7|1|R1|U|1883
9NL7|1|R1|G|1884
9NL7|1|R1|A|1885
9NL7|1|R1|U|1886
9NL7|1|R1|C|1887
9NL7|1|R1|G|1888
9NL7|1|R1|A|1889
9NL7|1|R1|A|1890
9NL7|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT