IL_9NL7_124

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

9NL7|1|R3|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL7_124 not in the Motif Atlas

Geometric match to IL_8CRE_457

Geometric discrepancy: 0.3684

The information below is about IL_8CRE_457

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9NL7|1|R3|U|70
9NL7|1|R3|A|71
9NL7|1|R3|A|72
9NL7|1|R3|C|73
*
9NL7|1|R3|G|97
9NL7|1|R3|A|98

Current chains

Chain R3

16S ribosomal RNA

Nearby chains