IL_9NLB_008

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLB_008 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2253

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9NLB|1|R1|C|239
9NLB|1|R1|C|240
9NLB|1|R1|A|241
9NLB|1|R1|G|242
9NLB|1|R1|U|243
9NLB|1|R1|A|244
9NLB|1|R1|G|245
*
9NLB|1|R1|C|253
9NLB|1|R1|G|254
9NLB|1|R1|A|255
9NLB|1|R1|A|256
9NLB|1|R1|C|257
9NLB|1|R1|G|258

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 35

Large ribosomal subunit protein bL35