IL_9NLB_073

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLB_073 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1071

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLB|1|R1|U|1851
9NLB|1|R1|U|1852
9NLB|1|R1|A|1853
9NLB|1|R1|A|1854
9NLB|1|R1|U|1855
9NLB|1|R1|U|1856
9NLB|1|R1|G|1857
9NLB|1|R1|A|1858
9NLB|1|R1|U|1859
9NLB|1|R1|G|1860
*
9NLB|1|R1|U|1882
9NLB|1|R1|U|1883
9NLB|1|R1|G|1884
9NLB|1|R1|A|1885
9NLB|1|R1|U|1886
9NLB|1|R1|C|1887
9NLB|1|R1|G|1888
9NLB|1|R1|A|1889
9NLB|1|R1|A|1890
9NLB|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain E

Energy-dependent translational throttle protein EttA