IL_9NLB_126

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9NLB|1|R3|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLB_126 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1028

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9NLB|1|R3|G|147
9NLB|1|R3|G|148
9NLB|1|R3|A|149
9NLB|1|R3|U|150
9NLB|1|R3|A|151
9NLB|1|R3|A|152
9NLB|1|R3|C|153
*
9NLB|1|R3|G|168
9NLB|1|R3|C|169
9NLB|1|R3|U|170
9NLB|1|R3|A|171
9NLB|1|R3|A|172
9NLB|1|R3|U|173
9NLB|1|R3|A|174
9NLB|1|R3|C|175

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20