IL_9NLB_166

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLB_166 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0965

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9NLB|1|R3|C|1303
9NLB|1|R3|G|1304
9NLB|1|R3|G|1305
9NLB|1|R3|A|1306
9NLB|1|R3|U|1307
9NLB|1|R3|U|1308
*
9NLB|1|R3|A|1329
9NLB|1|R3|U|1330
9NLB|1|R3|G|1331
9NLB|1|R3|A|1332
9NLB|1|R3|A|1333
9NLB|1|R3|G|1334

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sm

30S ribosomal protein S13