IL_9NLE_006

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_006 not in the Motif Atlas

Geometric match to IL_7ECO_006

Geometric discrepancy: 0.1825

The information below is about IL_7ECO_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9NLE|1|R1|U|153
9NLE|1|R1|U|154
9NLE|1|R1|A|155
*
9NLE|1|R1|U|170
9NLE|1|R1|U|171
9NLE|1|R1|A|172

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28