IL_9NLE_009

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_009 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2323

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9NLE|1|R1|C|239
9NLE|1|R1|C|240
9NLE|1|R1|A|241
9NLE|1|R1|G|242
9NLE|1|R1|U|243
9NLE|1|R1|A|244
9NLE|1|R1|G|245
*
9NLE|1|R1|C|253
9NLE|1|R1|G|254
9NLE|1|R1|A|255
9NLE|1|R1|A|256
9NLE|1|R1|C|257
9NLE|1|R1|G|258

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 35

Large ribosomal subunit protein bL35