IL_9NLE_055

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9NLE|1|R1|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_055 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1661

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9NLE|1|R1|G|1432
9NLE|1|R1|A|1433
9NLE|1|R1|A|1434
9NLE|1|R1|G|1435
*
9NLE|1|R1|C|1557
9NLE|1|R1|C|1558
9NLE|1|R1|U|1559
9NLE|1|R1|G|1560
9NLE|1|R1|C|1561

Current chains

Chain R1

23S ribosomal RNA

Nearby chains