3D structure

PDB id
9NLE (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAU*AAAUG
Length
9 nucleotides
Bulged bases
9NLE|1|R1|U|1554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLE_056 not in the Motif Atlas
Homologous match to IL_5J7L_297
Geometric discrepancy: 0.106
The information below is about IL_5J7L_297
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_99646.2
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9NLE|1|R1|C|1437
9NLE|1|R1|U|1438
9NLE|1|R1|A|1439
9NLE|1|R1|U|1440
*
9NLE|1|R1|A|1551
9NLE|1|R1|A|1552
9NLE|1|R1|A|1553
9NLE|1|R1|U|1554
9NLE|1|R1|G|1555

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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