IL_9NLE_076

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_076 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.092

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLE|1|R1|U|1851
9NLE|1|R1|U|1852
9NLE|1|R1|A|1853
9NLE|1|R1|A|1854
9NLE|1|R1|U|1855
9NLE|1|R1|U|1856
9NLE|1|R1|G|1857
9NLE|1|R1|A|1858
9NLE|1|R1|U|1859
9NLE|1|R1|G|1860
*
9NLE|1|R1|U|1882
9NLE|1|R1|U|1883
9NLE|1|R1|G|1884
9NLE|1|R1|A|1885
9NLE|1|R1|U|1886
9NLE|1|R1|C|1887
9NLE|1|R1|G|1888
9NLE|1|R1|A|1889
9NLE|1|R1|A|1890
9NLE|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain E

Energy-dependent translational throttle protein EttA