IL_9NLE_127

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GUGC

Length

9 nucleotides

Bulged bases

9NLE|1|R3|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_127 not in the Motif Atlas

Geometric match to IL_8CRE_434

Geometric discrepancy: 0.3246

The information below is about IL_8CRE_434

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9NLE|1|R3|G|128
9NLE|1|R3|A|129
9NLE|1|R3|A|130
9NLE|1|R3|A|131
9NLE|1|R3|C|132
*
9NLE|1|R3|G|230
9NLE|1|R3|U|231
9NLE|1|R3|G|232
9NLE|1|R3|C|233

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17

Chain st

30S ribosomal protein S20