IL_9NLE_133

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9NLE|1|R3|U|244, 9NLE|1|R3|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_133 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1347

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9NLE|1|R3|G|242
9NLE|1|R3|A|243
9NLE|1|R3|U|244
9NLE|1|R3|U|245
9NLE|1|R3|A|246
9NLE|1|R3|G|247
*
9NLE|1|R3|C|277
9NLE|1|R3|G|278
9NLE|1|R3|A|279
9NLE|1|R3|C|280
9NLE|1|R3|G|281
9NLE|1|R3|A|282
9NLE|1|R3|U|283
9NLE|1|R3|C|284

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17