IL_9NLE_141

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_141 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1427

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9NLE|1|R3|G|450
9NLE|1|R3|A|451
9NLE|1|R3|A|452
9NLE|1|R3|G|453
9NLE|1|R3|G|454
9NLE|1|R3|G|455
*
9NLE|1|R3|C|477
9NLE|1|R3|A|478
9NLE|1|R3|U|479
9NLE|1|R3|U|480
9NLE|1|R3|G|481
9NLE|1|R3|A|482
9NLE|1|R3|C|483

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16