IL_9NLE_172

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9NLE|1|R3|C|1400, 9NLE|1|R3|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_172 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.127

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9NLE|1|R3|C|1399
9NLE|1|R3|C|1400
9NLE|1|R3|G|1401
*
9NLE|1|R3|C|1501
9NLE|1|R3|A|1502
9NLE|1|R3|A|1503
9NLE|1|R3|G|1504

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain T

Transfer RNA; tRNA

Chain se

Small ribosomal subunit protein uS5