IL_9NLF_074

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_074 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.104

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLF|1|R1|U|1851
9NLF|1|R1|U|1852
9NLF|1|R1|A|1853
9NLF|1|R1|A|1854
9NLF|1|R1|U|1855
9NLF|1|R1|U|1856
9NLF|1|R1|G|1857
9NLF|1|R1|A|1858
9NLF|1|R1|U|1859
9NLF|1|R1|G|1860
*
9NLF|1|R1|U|1882
9NLF|1|R1|U|1883
9NLF|1|R1|G|1884
9NLF|1|R1|A|1885
9NLF|1|R1|U|1886
9NLF|1|R1|C|1887
9NLF|1|R1|G|1888
9NLF|1|R1|A|1889
9NLF|1|R1|A|1890
9NLF|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT