IL_9NLF_130

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9NLF|1|R3|U|244, 9NLF|1|R3|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_130 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1559

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9NLF|1|R3|G|242
9NLF|1|R3|A|243
9NLF|1|R3|U|244
9NLF|1|R3|U|245
9NLF|1|R3|A|246
9NLF|1|R3|G|247
*
9NLF|1|R3|C|277
9NLF|1|R3|G|278
9NLF|1|R3|A|279
9NLF|1|R3|C|280
9NLF|1|R3|G|281
9NLF|1|R3|A|282
9NLF|1|R3|U|283
9NLF|1|R3|C|284

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17