IL_9NLF_145

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_145 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.1028

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

9NLF|1|R3|G|654
9NLF|1|R3|A|655
*
9NLF|1|R3|U|751
9NLF|1|R3|G|752
9NLF|1|R3|A|753
9NLF|1|R3|C|754

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sh

30S ribosomal protein S8

Chain so

Small ribosomal subunit protein uS15