IL_9NLF_148

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_148 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.1256

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9NLF|1|R3|A|673
9NLF|1|R3|G|674
9NLF|1|R3|A|675
9NLF|1|R3|A|676
9NLF|1|R3|U|677
*
9NLF|1|R3|G|713
9NLF|1|R3|G|714
9NLF|1|R3|A|715
9NLF|1|R3|A|716
9NLF|1|R3|U|717

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain sf

30S ribosomal protein S6, non-modified isoform

Chain sk

Small ribosomal subunit protein uS11

Chain sr

30S ribosomal protein S18

Chain su

Small ribosomal subunit protein bS21