IL_9NLF_152

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_152 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0892

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9NLF|1|R3|G|887
9NLF|1|R3|G|888
9NLF|1|R3|A|889
9NLF|1|R3|G|890
9NLF|1|R3|U|891
9NLF|1|R3|A|892
9NLF|1|R3|C|893
9NLF|1|R3|G|894
*
9NLF|1|R3|U|905
9NLF|1|R3|A|906
9NLF|1|R3|A|907
9NLF|1|R3|A|908
9NLF|1|R3|A|909
9NLF|1|R3|C|910

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12