IL_9NLH_014

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_014 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1002

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9NLH|1|R1|U|606
9NLH|1|R1|U|607
9NLH|1|R1|A|608
9NLH|1|R1|A|609
9NLH|1|R1|C|610
*
9NLH|1|R1|G|618
9NLH|1|R1|G|619
9NLH|1|R1|G|620
9NLH|1|R1|A|621
9NLH|1|R1|G|622

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 4

Large ribosomal subunit protein uL4