IL_9NLH_016

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NLH|1|R1|G|801, 9NLH|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0995

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NLH|1|R1|G|674
9NLH|1|R1|A|675
9NLH|1|R1|A|676
9NLH|1|R1|A|677
9NLH|1|R1|C|678
*
9NLH|1|R1|G|799
9NLH|1|R1|A|800
9NLH|1|R1|G|801
9NLH|1|R1|A|802
9NLH|1|R1|U|803
9NLH|1|R1|A|804
9NLH|1|R1|G|805
9NLH|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 4

Large ribosomal subunit protein uL4