IL_9NLH_040

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

9NLH|1|R1|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_040 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.2885

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9NLH|1|R1|C|1043
9NLH|1|R1|C|1044
9NLH|1|R1|C|1045
9NLH|1|R1|A|1046
9NLH|1|R1|G|1047
9NLH|1|R1|A|1048
9NLH|1|R1|C|1049
9NLH|1|R1|A|1050
9NLH|1|R1|G|1051
*
9NLH|1|R1|U|1108
9NLH|1|R1|C|1109
9NLH|1|R1|G|1110
9NLH|1|R1|A|1111
9NLH|1|R1|G|1112

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL6