3D structure

PDB id
9NLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with YheS-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLH_046 not in the Motif Atlas
Geometric match to IL_8P9A_417
Geometric discrepancy: 0.153
The information below is about IL_8P9A_417
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

9NLH|1|R1|G|1310
9NLH|1|R1|G|1311
9NLH|1|R1|U|1312
9NLH|1|R1|U|1313
*
9NLH|1|R1|A|1603
9NLH|1|R1|C|1604

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 23
Large ribosomal subunit protein uL23
Chain 34
50S ribosomal protein L34

Coloring options:


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