IL_9NLH_171

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_171 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1897

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9NLH|1|R3|C|1303
9NLH|1|R3|G|1304
9NLH|1|R3|G|1305
9NLH|1|R3|A|1306
9NLH|1|R3|U|1307
9NLH|1|R3|U|1308
*
9NLH|1|R3|A|1329
9NLH|1|R3|U|1330
9NLH|1|R3|G|1331
9NLH|1|R3|A|1332
9NLH|1|R3|A|1333
9NLH|1|R3|G|1334

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sm

30S ribosomal protein S13