IL_9NLJ_009

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_009 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2245

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9NLJ|1|R1|C|239
9NLJ|1|R1|C|240
9NLJ|1|R1|A|241
9NLJ|1|R1|G|242
9NLJ|1|R1|U|243
9NLJ|1|R1|A|244
9NLJ|1|R1|G|245
*
9NLJ|1|R1|C|253
9NLJ|1|R1|G|254
9NLJ|1|R1|A|255
9NLJ|1|R1|A|256
9NLJ|1|R1|C|257
9NLJ|1|R1|G|258

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35