IL_9NLJ_018

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NLJ|1|R1|G|801, 9NLJ|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0819

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NLJ|1|R1|G|674
9NLJ|1|R1|A|675
9NLJ|1|R1|A|676
9NLJ|1|R1|A|677
9NLJ|1|R1|C|678
*
9NLJ|1|R1|G|799
9NLJ|1|R1|A|800
9NLJ|1|R1|G|801
9NLJ|1|R1|A|802
9NLJ|1|R1|U|803
9NLJ|1|R1|A|804
9NLJ|1|R1|G|805
9NLJ|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 4

Large ribosomal subunit protein uL4