IL_9NLJ_023

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9NLJ|1|R1|G|776, 9NLJ|1|R1|A|788, 9NLJ|1|R1|A|789, 9NLJ|1|R1|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_023 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0821

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9NLJ|1|R1|G|775
9NLJ|1|R1|G|776
9NLJ|1|R1|G|777
*
9NLJ|1|R1|C|787
9NLJ|1|R1|A|788
9NLJ|1|R1|A|789
9NLJ|1|R1|U|790
9NLJ|1|R1|C|791

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 22

Large ribosomal subunit protein uL22

Chain 34

50S ribosomal protein L34