IL_9NLJ_030
3D structure
- PDB id
- 9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with Uup-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLJ_030 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.1287
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9NLJ|1|R1|G|864
9NLJ|1|R1|C|865
9NLJ|1|R1|A|866
9NLJ|1|R1|C|867
9NLJ|1|R1|U|868
*
9NLJ|1|R1|A|909
9NLJ|1|R1|A|910
9NLJ|1|R1|A|911
9NLJ|1|R1|C|912
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 50S ribosomal protein L16
- Chain R2
- 5S ribosomal RNA; 5S rRNA
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