IL_9NLJ_075

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_075 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1211

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLJ|1|R1|U|1851
9NLJ|1|R1|U|1852
9NLJ|1|R1|A|1853
9NLJ|1|R1|A|1854
9NLJ|1|R1|U|1855
9NLJ|1|R1|U|1856
9NLJ|1|R1|G|1857
9NLJ|1|R1|A|1858
9NLJ|1|R1|U|1859
9NLJ|1|R1|G|1860
*
9NLJ|1|R1|U|1882
9NLJ|1|R1|U|1883
9NLJ|1|R1|G|1884
9NLJ|1|R1|A|1885
9NLJ|1|R1|U|1886
9NLJ|1|R1|C|1887
9NLJ|1|R1|G|1888
9NLJ|1|R1|A|1889
9NLJ|1|R1|A|1890
9NLJ|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain U

Uup