IL_9NLJ_091

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_091 not in the Motif Atlas

Homologous match to IL_5J7L_391

Geometric discrepancy: 0.0862

The information below is about IL_5J7L_391

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9NLJ|1|R1|A|2453
9NLJ|1|R1|G|2454
*
9NLJ|1|R1|C|2498
9NLJ|1|R1|C|2499
9NLJ|1|R1|U|2500

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 27

Large ribosomal subunit protein bL27

Chain 3

50S ribosomal protein L3