IL_9NLJ_096

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_096 not in the Motif Atlas

Geometric match to IL_4AOB_003

Geometric discrepancy: 0.3165

The information below is about IL_4AOB_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

9NLJ|1|R1|C|2507
9NLJ|1|R1|G|2508
9NLJ|1|R1|G|2509
*
9NLJ|1|R1|C|2579
9NLJ|1|R1|U|2580
9NLJ|1|R1|G|2581
9NLJ|1|R1|G|2582

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 27

Large ribosomal subunit protein bL27

Chain 3

50S ribosomal protein L3