IL_9NLJ_124

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GUGC

Length

9 nucleotides

Bulged bases

9NLJ|1|R3|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_124 not in the Motif Atlas

Geometric match to IL_8CRE_434

Geometric discrepancy: 0.3183

The information below is about IL_8CRE_434

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9NLJ|1|R3|G|128
9NLJ|1|R3|A|129
9NLJ|1|R3|A|130
9NLJ|1|R3|A|131
9NLJ|1|R3|C|132
*
9NLJ|1|R3|G|230
9NLJ|1|R3|U|231
9NLJ|1|R3|G|232
9NLJ|1|R3|C|233

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17

Chain st

30S ribosomal protein S20