IL_9NLJ_137

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_137 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1427

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9NLJ|1|R3|G|450
9NLJ|1|R3|A|451
9NLJ|1|R3|A|452
9NLJ|1|R3|G|453
9NLJ|1|R3|G|454
9NLJ|1|R3|G|455
*
9NLJ|1|R3|C|477
9NLJ|1|R3|A|478
9NLJ|1|R3|U|479
9NLJ|1|R3|U|480
9NLJ|1|R3|G|481
9NLJ|1|R3|A|482
9NLJ|1|R3|C|483

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16