IL_9NLJ_139
3D structure
- PDB id
- 9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with Uup-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9NLJ|1|R3|A|532, 9NLJ|1|R3|U|534, 9NLJ|1|R3|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLJ_139 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2647
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NLJ|1|R3|G|515
9NLJ|1|R3|U|516
9NLJ|1|R3|G|517
9NLJ|1|R3|C|518
9NLJ|1|R3|C|519
9NLJ|1|R3|A|520
9NLJ|1|R3|G|521
*
9NLJ|1|R3|C|528
9NLJ|1|R3|G|529
9NLJ|1|R3|G|530
9NLJ|1|R3|U|531
9NLJ|1|R3|A|532
9NLJ|1|R3|A|533
9NLJ|1|R3|U|534
9NLJ|1|R3|A|535
9NLJ|1|R3|C|536
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain M
- mRNA
- Chain sc
- Small ribosomal subunit protein uS3
- Chain sd
- 30S ribosomal protein S4
- Chain sl
- Small ribosomal subunit protein uS12
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