IL_9NLJ_148
3D structure
- PDB id
- 9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with Uup-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLJ_148 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0901
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9NLJ|1|R3|A|673
9NLJ|1|R3|G|674
9NLJ|1|R3|A|675
9NLJ|1|R3|A|676
9NLJ|1|R3|U|677
*
9NLJ|1|R3|G|713
9NLJ|1|R3|G|714
9NLJ|1|R3|A|715
9NLJ|1|R3|A|716
9NLJ|1|R3|U|717
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L2
- Chain sf
- 30S ribosomal protein S6, non-modified isoform
- Chain sk
- Small ribosomal subunit protein uS11
- Chain sr
- 30S ribosomal protein S18
- Chain su
- Small ribosomal subunit protein bS21
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