IL_9NLJ_152

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_152 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1046

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9NLJ|1|R3|G|887
9NLJ|1|R3|G|888
9NLJ|1|R3|A|889
9NLJ|1|R3|G|890
9NLJ|1|R3|U|891
9NLJ|1|R3|A|892
9NLJ|1|R3|C|893
9NLJ|1|R3|G|894
*
9NLJ|1|R3|U|905
9NLJ|1|R3|A|906
9NLJ|1|R3|A|907
9NLJ|1|R3|A|908
9NLJ|1|R3|A|909
9NLJ|1|R3|C|910

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sl

Small ribosomal subunit protein uS12