IL_9NLJ_175

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_175 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1552

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

9NLJ|1|R3|G|1416
9NLJ|1|R3|G|1417
9NLJ|1|R3|A|1418
9NLJ|1|R3|G|1419
*
9NLJ|1|R3|U|1481
9NLJ|1|R3|G|1482
9NLJ|1|R3|A|1483
9NLJ|1|R3|C|1484

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sl

Small ribosomal subunit protein uS12