IL_9NLN_009

3D structure

PDB id

9NLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Coxakievirus B3 IRES Domain V in Complex with a Fab

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLN_009 not in the Motif Atlas

Geometric match to IL_8GLP_281

Geometric discrepancy: 0.1284

The information below is about IL_8GLP_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9NLN|1|R|C|9
9NLN|1|R|U|10
9NLN|1|R|G|11
*
9NLN|1|R|U|102
9NLN|1|R|U|103
9NLN|1|R|G|104

Current chains

Chain R

RNA (CVB3 IRES Domain V)

Nearby chains