IL_9NLQ_006

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0824

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NLQ|1|R1|G|188
9NLQ|1|R1|G|189
9NLQ|1|R1|A|190
9NLQ|1|R1|A|191
9NLQ|1|R1|C|192
9NLQ|1|R1|U|193
9NLQ|1|R1|G|194
*
9NLQ|1|R1|C|201
9NLQ|1|R1|U|202
9NLQ|1|R1|A|203
9NLQ|1|R1|A|204
9NLQ|1|R1|G|205
9NLQ|1|R1|U|206
9NLQ|1|R1|A|207
9NLQ|1|R1|C|208

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 28

50S ribosomal protein L28

Chain 35

Large ribosomal subunit protein bL35