IL_9NLQ_021

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9NLQ|1|R1|G|776, 9NLQ|1|R1|A|788, 9NLQ|1|R1|A|789, 9NLQ|1|R1|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_021 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.1256

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9NLQ|1|R1|G|775
9NLQ|1|R1|G|776
9NLQ|1|R1|G|777
*
9NLQ|1|R1|C|787
9NLQ|1|R1|A|788
9NLQ|1|R1|A|789
9NLQ|1|R1|U|790
9NLQ|1|R1|C|791

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 22

Large ribosomal subunit protein uL22

Chain 34

50S ribosomal protein L34