IL_9NLQ_031

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

9NLQ|1|R1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_031 not in the Motif Atlas

Homologous match to IL_5J7L_275

Geometric discrepancy: 0.4147

The information below is about IL_5J7L_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29366.1

Basepair signature

cWW-cWW

Number of instances in this motif group

266

Unit IDs

9NLQ|1|R1|G|880
9NLQ|1|R1|G|881
*
9NLQ|1|R1|U|895
9NLQ|1|R1|A|896
9NLQ|1|R1|C|897

Current chains

Chain R1

23S ribosomal RNA

Nearby chains