IL_9NLQ_047

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9NLQ|1|R1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_047 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1602

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9NLQ|1|R1|C|1319
9NLQ|1|R1|C|1320
9NLQ|1|R1|A|1321
9NLQ|1|R1|A|1322
9NLQ|1|R1|C|1323
*
9NLQ|1|R1|G|1331
9NLQ|1|R1|G|1332
9NLQ|1|R1|G|1333

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22