IL_9NLQ_073

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_073 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1067

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLQ|1|R1|U|1851
9NLQ|1|R1|U|1852
9NLQ|1|R1|A|1853
9NLQ|1|R1|A|1854
9NLQ|1|R1|U|1855
9NLQ|1|R1|U|1856
9NLQ|1|R1|G|1857
9NLQ|1|R1|A|1858
9NLQ|1|R1|U|1859
9NLQ|1|R1|G|1860
*
9NLQ|1|R1|U|1882
9NLQ|1|R1|U|1883
9NLQ|1|R1|G|1884
9NLQ|1|R1|A|1885
9NLQ|1|R1|U|1886
9NLQ|1|R1|C|1887
9NLQ|1|R1|G|1888
9NLQ|1|R1|A|1889
9NLQ|1|R1|A|1890
9NLQ|1|R1|G|1891

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT